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Schedule

FEBS PC2024 program

June 09-15, 2024

Faculty of Science University of South Bohemia Ceske Budejovice Czech Republic

Lectures

8:30–12:30

7:45-8:30 Breakfast

13:00-14:00 Lunch

Lab Exercises

14:00–19:00

15:30 Coffee and tea time

19:00 Dinner (Tue, Thu)

Evening events

20:00

Sunday

June 09

18:00-20:00 Registration



Monday

June 10

morning

9:00-10:00 and 12:00-13:00 Registration

10:00-12:00 practical WS [TBA]

Monday

June 10

afternoon

13:00-13:15

Welcome and Course remarks [Ivana Kutá Smatanová & Pavlína Řezáčová]

13:15-13:30

Prologue by the USB representative – rector or vice-rector

Prologue by the FSci USB representative – dean of FSci [František Vácha]

13:30-13:45

Introduction of FEBS activities by the FEBS ACC representative [Mutay Aslan]

13:45-14:15

Tackling the reproducibility crisis in scientific research [Sara Fuentes, Managing Editor of FEBS Open Bio] (on-line)

14:15-14:35

Greeting speech by Rolf Hilgenfeld (on-line)

Greeting speech by Juan Ma. Garcia-Ruiz (on-line)

14:35 Coffee and tea time

15:00-15:45

AlphaFold and biochemical considerations for protein crystallization [Joe Ng]

15:45-16:30

InCellCryst - A streamlined approach for protein crystallization in living cells [Lars Redecke]

16:30-17:15

Crystallization of membrane proteins in lipidic systems [Martin Caffrey]

17:15-18:00

Synthetic macrocycles as mediators of protein crystallization [Peter Crowley]

18:00-18:45

Medical chemistry [Andrea Brancale]

Monday

June 10

evening

20:00

Welcome party

Tuesday

June 11

morning

8:30-9:15

Principles of protein crystallization [Bernhard Rupp]

9:15-10:00

From protein expression and purification to crystallization [Sergio Martínez Rodríguez]

10:00-10:30

Crystallization for the desperate [Terese Bergfors]

10:30 Coffee and tea time

10:45-11:25

Hofmeister ion series and the protein phase diagram [Jeroen Mesters]

11:25-12:05

Protein crystallization by capillary counter-diffusion methods [Jose A. Gavira]

12:05-12:45

Construct design and limited proteolysis strategies [Jerome Basquin]

12:45-13:00

A Crystallographer’s guide to the Galaxy [Paul Driver, Molecular Dimensions]

Tuesday

June 11

afternoon

1. Intracellular protein crystallization [L. Redecke]

2. Conventional techniques and crystallization of own proteins and [J. Mesters]

3. Crystallization of membrane proteins in lipidic system [M. Caffrey]

4. Observation of crystal growth / Seeding [T. Bergfors]

5. Capillary protein crystallization using counter-diffusion techniques [J. Gavira]

6. Crystallization under oil [L. Govada]

Tuesday

June 11

evening

20:00 Discussion with speakers and tutors of the day + posters section I

           Theory of X-ray diffraction I. [Jeroen Mesters]

Wednesday

June 12

morning

8:30-9:15

Latest Methods in scoring and optimizing sample suspensions prior to crystallization experiments and monitoring nucleation and crystal growth [Christian Betzel]

9:15-9:45

Protein as the main variable in crystallization [Ľubica Urbániková]

9:45-10:15

Unconventional crystallization strategies and techniques for screening and optimization [Lata Govada]

10:15-11:00

Microfluidics in action: crystallization and crystallography in microchips [Claude Sauter]

11:00 Coffee and tea time

11:15-11:45

What's this in my drop? Identifying drop phenomena". [Terese Bergfors]

11:45-12:30

Microseed Matrix Screening and its use in Structure Based Drug Discovery [May E. Sharpe]

12:30-13:00

Sample preparation for routine and advanced structural biology, including serial data collection, microED, and cryoEM [Patrick Shaw Stewart]

Wednesday

June 12

afternoon

1. Observation of crystal growth / Seeding [T. Bergfors]

2. Experimental phasing: practical considerations [J. Basquin]

3. "Random" Microseeding [P. Pachl, P. Shaw Stewart]

4. Capillary protein crystallization using counter-diffusion techniques [J. Gavira]

5. AlphaFold and biochemical considerations for protein crystallization [Joe Ng]

6. From the biomolecule solution to its 3D structure in a microfluidic chip [C. Sauter]

Optional exercises 1-2

Crystallization under oil [L. Govada]

Wednesday

June 12

evening

Visit of town Ceske Budejovice and the evening in own direction

Thursday

June 13

morning

8:30-9:00

Using Fluorescence to Find Your Crystals [Crissy L. Tarver]

9:00-9:45

Crystallization Screening Results Analysis and Condition Prediction [Marc L. Pusey]

9:45-10:30

Crystallographic fragment-screening: workflow, tools and procedures [Manfred Weiss]

10:30 Coffee and tea time

10:45-11:30

Preparation of protein samples for crystallization experiments [Pavlína Řezáčová]

11:30-12:15

Introduction to single particle analysis by cryo-EM [Oksana Degtjarik]

12:15-13:00

Sample preparation for single particle cryo-EM [Iuliia Iermak]

Thursday

June 13

afternoon

1. Dynamic light scattering [K. Dierks]

2. Trace Fluorescent Labeling and Low Cost Fluorescent Imaging [M. Pusey, C. Tarver]

3. Crystal observation, testing, handling, mounting and cryocooling [ J. Brynda, P. Pachl]

4. Intracellular protein crystallization [L. Redecke]

5. Soaking and co-crystallization [B. Kaščáková]

6. Single particle cryo-EM [H. Luecke]

Optional exercises 1-2

"Random" Microseeding [P. Pachl, P. Shaw Stewart]

Thursday

June 13

evening

20:00 Discussion with speakers and tutors of the day + posters section II

           Theory of X-ray diffraction II. [Jeroen Mesters]

           Poster prize awards

Friday

June 14

morning

8:30-9:15

Extremely brilliant X-ray sources and new opportunities in macromolecular crystallography [Petr Pachl]

9:15-10:00

Optimisation of crystal growth for neutron crystallography [Monika Budayová - Spano]

10:00-10:45

Structure-based drug discovery using cryoEM [Hartmut Luecke]

10:45 Coffee and tea time

11:00-11:05    3 students awarded by poster prize will give 5min lectures

Student presentation 1

11:05-11:10

Student presentation 2

11:10-11:15

Student presentation 3

11:20-11:40

Integration of AFM and other optical techniques [Dušan Novotný]

11:40-12:10

Assessing the diffraction quality of crystals [Vernon Smith]

Friday

June 14

afternoon

14:00-14:45

Preparation and crystallization of protein complexes: Tricks and examples from our host-virus studies [Ivana Nemčovičová]

15:30 Coffee and tea time

15:30-16:15
Round table discussion and final remarks [speakers and organizers]

16:30-19:00

Final work in the lab

Friday

June 14

evening

19:30 Closing ceremony followed by Farewell dinner

Saturday

June 15

morning

Optional exercises:

Crystal observation, testing, handling, mounting and cryocooling [P. Pachl, J. Brynda]

Conventional techniques and crystallization of own proteins [J. Mesters]

Intracellular protein crystallization [L. Redecke]

Trace Fluorescent Labeling and Low Cost Fluorescent Imaging [M. Pusey, C. Tarver]

AlphaFold and biochemical considerations for protein crystallization [Joe Ng]

12:00 Lunch take away and End of the course

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